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MetNet - Plant pathway database

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You are in: gene > AT5G53120 / spermidine synthase 3
The name of this entity may also refer to: AT5G53120 / spermidine synthase 3 [polypeptide] AT5G53120 / spermidine synthase 3 [RNA]

General info Literature Cellular context
TAIR information [AT5G53120]
Affy25k probenames:248248_at  
Affy8k probenames: <no data>
AFGC IDs: <no data>
Gene names: spermidine synthase 3   spermidine synthase 3   spermidine synthase 3   spermidine synthase 3   spermidine synthase 3   spermidine synthase 3  
Description: spermidine synthase 3 (SPDS3); CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: spermidine synthase 1 (TAIR:AT1G23820.1); Has 5367 Blast hits to 5364 proteins in 1535 species: Archae - 174; Bacteria - 2998; Metazoa - 341; Fungi - 210; Plants - 426; Viruses - 0; Other Eukaryotes - 1218 (source: NCBI BLink).   spermidine synthase 3 (SPDS3); CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: spermidine synthase 1 (TAIR:AT1G23820.1); Has 5398 Blast hits to 5395 proteins in 1543 species: Archae - 175; Bacteria - 3028; Metazoa - 341; Fungi - 210; Plants - 426; Viruses - 0; Other Eukaryotes - 1218 (source: NCBI BLink).   spermidine synthase 3 (SPDS3); CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: spermidine synthase 1 (TAIR:AT1G23820.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).   spermidine synthase 3 (SPDS3); CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: spermidine synthase 1 (TAIR:AT1G23820.1).  
Gene ontology:
FGO:0003824catalytic activity
  GO:0005515protein binding
  GO:0016768spermine synthase activity
  GO:0004766spermidine synthase activity
PGO:0006596polyamine biosynthetic process
  GO:0042742defense response to bacterium
CGO:0005634nucleus
  GO:0005737cytoplasm
NCBI links
Send this gene to ATGeneSearch for more information
Entity information

This entity is present in: nucleus
Synonyms were found. This entity is also known as: SPDS3, SPERMIDINE SYNTHASE, SPERMIDINE SYNTHASE 3, SPMS
Pathways
The entity [AT5G53120 / spermidine synthase 3] participates in the following pathways:

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Pathway [4 shown] Organism Created on
spermidine biosynthesis I Arabidopsis Mon Jul 29, 2013
spermine biosynthesis Arabidopsis Mon Jul 29, 2013
superpathway of polyamine biosynthesis Arabidopsis Mon Jul 29, 2013
superpathway of polyamine biosynthesis II Arabidopsis Mon Jul 29, 2013

Interactions
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Transcription

Copyright © 2006-2016 Wurtele lab. Copyright refers to the integration and online application, not the data from the various sources.

 

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