Warning: session_start() [function.session-start]: open(C:\Windows\Temp\\sess_eiftc2e11bqnknoh1bk808ubk2, O_RDWR) failed: Invalid argument (22) in D:\inetpub\wwwroot\include\lib_auth.php on line 5

Warning: Cannot modify header information - headers already sent by (output started at D:\inetpub\wwwroot\include\ui_interaction.php:65) in D:\inetpub\wwwroot\include\data_organism.php on line 119
MetNet - Plant pathway database

Browse by entity

You are in: gene > AT5G13930 / Chalcone and stilbene synthase family protein
The name of this entity may also refer to: AT5G13930 / Chalcone and stilbene synthase family protein [polypeptide] AT5G13930 / Chalcone and stilbene synthase family protein [RNA]

General info Literature Cellular context
TAIR information [AT5G13930]
Affy25k probenames:250207_at  
Affy8k probenames: 18929_s_at  
AFGC IDs: 34H9T7 (T04269)   177N23T7 (H36324)   187C23T7 (R89978)  
Gene names: Chalcone and stilbene synthase family protein  
Description: "TRANSPARENT TESTA 4 (TT4); FUNCTIONS IN: naringenin-chalcone synthase activity; INVOLVED IN: in 11 processes; LOCATED IN: plant-type vacuole membrane, endoplasmic reticulum, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone/stilbene synthase, N-terminal (InterPro:IPR001099), Thiolase-like (InterPro:IPR016039), Polyketide synthase, type III (InterPro:IPR011141), Chalcone/stilbene synthase, active site (InterPro:IPR018088), Chalcone/stilbene synthase, C-terminal (InterPro:IPR012328), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: Chalcone and stilbene synthase family protein (TAIR:AT4G34850.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink)."  
Gene ontology:
PGO:0009813flavonoid biosynthetic process
  GO:0009718anthocyanin-containing compound biosynthetic process
  GO:0009753response to jasmonic acid stimulus
  GO:0009715chalcone biosynthetic process
  GO:0009629response to gravity
  GO:0010224response to UV-B
  GO:0031540regulation of anthocyanin biosynthetic process
  GO:0009744response to sucrose stimulus
  GO:0009926auxin polar transport
  GO:0006979response to oxidative stress
  GO:0008152metabolic process
  GO:0009733response to auxin stimulus
  GO:0009411response to UV
  GO:0009058biosynthetic process
  GO:0009611response to wounding
FGO:0016747transferase activity, transferring acyl groups other than amino-acyl groups
  GO:0003824catalytic activity
  GO:0016210naringenin-chalcone synthase activity
  GO:0005515protein binding
  GO:0016746transferase activity, transferring acyl groups
CGO:0005634nucleus
  GO:0005783endoplasmic reticulum
  GO:0009705plant-type vacuole membrane
  GO:0005737cytoplasm
NCBI links
Send this gene to ATGeneSearch for more information
Entity information

Abbreviations were found. This entity is also known as: WHP
This entity is present in: nucleus
Synonyms were found. This entity is also known as: ATCHS, chalcone synthase, CHALCONE/STILBENE SYNTHASE, CHS, CHSN, NARINGENIN-CHALCONE SYNTHASE, TESTA 4 PROTEIN, transparent testa 4, TT4, whp
PubMed references are attached to this entity: [PubMed: 53-56] [PubMed: 12943753]
chalcone synthase (naringenin-chalcone synthase) (testa 4 protein) [aracyc]
chalcone synthase (naringenin-chalcone synthase); identical to SP|P13114 ;supported by full-length cDNA: Ceres:38370. [eve]
flavonoid biosynthesis ; [eve]
Pathways
The entity [AT5G13930 / Chalcone and stilbene synthase family protein] participates in the following pathways:

Options: Visualize:       Download:      
Pathway [8 shown] Organism Created on
AGRIS regulatory network - full Arabidopsis Tue Aug 29, 2006
aromatic polyketides biosynthesis Arabidopsis Mon Jul 29, 2013
Flavonoid (WYJ) Arabidopsis Fri Oct 22, 2004
flavonoid biosynthesis Arabidopsis Mon Jul 29, 2013
flavonoid biosynthesis (in equisetum) Arabidopsis Mon Jul 29, 2013
phloridzin biosynthesis Arabidopsis Mon Jul 29, 2013
pinobanksin biosynthesis Arabidopsis Mon Jul 29, 2013
resveratrol biosynthesis Arabidopsis Mon Jul 29, 2013

Interactions
Browse interactions [2]: By type By location All interactions
Type
Positive regulation/Direct
Transcription

Copyright © 2006-2016 Wurtele lab. Copyright refers to the integration and online application, not the data from the various sources.

 

Number of queries executed: 12

Warning: Unknown: open(C:\Windows\Temp\\sess_eiftc2e11bqnknoh1bk808ubk2, O_RDWR) failed: Invalid argument (22) in Unknown on line 0

Warning: Unknown: Failed to write session data (files). Please verify that the current setting of session.save_path is correct (C:\Windows\Temp\) in Unknown on line 0