We provide a number of tools to integrate MetNet application with other platforms:
- Cytoscape plugin
The MetNet Plug-ins for Cytoscape are a set of Java open-source programs for visualizing and analyzing biological networks. The goal is to capture the intuitions of biologists and provide a modeling framework to assess large amounts of data.
Resulting sub-networks can be identified and interpreted using simple fuzzy cognitive maps. Data from high-throughput experiments (transcriptomics, proteomics and metabolomics) can be displayed and modeled in the context of the network graphs.
- Integrated platform
Currently, a project is under way to integrate the MetNet tools and MetNetDB into a single platform that can be downloaded and installed on a user's computer. The goal of the project is to not only provide the full functionality of the existing tools, but also to make it easy for the user to open another tool using the current data.